Follow these steps to quickly get started in Code Ocean, when migrating from Posit.
- Set up the following secrets
AWS Cloud Credentials
- AWS Access Key ID: username provided to you via 1Password
- AWS Secret Access Key: password provided to you via 1Password
- AWS Region:
us-west-2
Custom Key: your EMDB_API_KEY
API Credentials: your Portal username and password
- Set up a data asset that contains your Posit files
- Select the Import from S3 Bucket option
- Bucket name:
enablemedicine-{colab|converge}-co-{portal username} , where:
{colab|converge} should be replaced with the name of the Posit deployment your account was on (e.g., either colab.analysis.enablemedicine.com or converge.analysis.enablemedicine.com){portal username} should be replaced with your Enable Portal username
- For example, if we have a user whose username is
john.doe on the converge.analysis.enablemedicine.com deployment, the bucket name should be enablemedicine-converge-co-john.doe
- Set up a capsule and start a cloud workstation
- Create a new compute capsule (you can start by duplicating the workbench training capsule, which has already defined appropriate custom names for secrets required by packages developed by Enable)
- Under Environment, select the latest version of the
Enable Medicine Base Image
- Under Data, attach the data asset that you created in Step 2. This will make the files from your Posit home directory available at
/data
- Launch an RStudio IDE cloud workstation!
Additional resources